Uses of Class org.xmlcml.euclid.EuclidRuntimeException (CML Euclid 2.9 API)

Packages that use EuclidRuntimeException
Package Description

org.xmlcml.euclid

Packages that use EuclidRuntimeException
Package	Description
org.xmlcml.euclid

Uses of EuclidRuntimeException in org.xmlcml.euclid

Methods in org.xmlcml.euclid with parameters of type EuclidRuntimeException
Modifier and Type	Method and Description
`int`	RealSquareMatrix.`diagonaliseAndReturnRank(RealArray eigenvalues, RealSquareMatrix eigenvectors, EuclidRuntimeException illCond)` diagonalisation returns eigenvalues and vectors as MODIFIED arguments; 'this' is NOT affected USE JAMA INSTEAD Note that IllCondMatrixException is RETURNED and not thrown
`void`	Point3Vector.`inertialAxes(RealArray eigval, RealSquareMatrix eigvect, EuclidRuntimeException illCond)` Deprecated. (doesn't work)

Methods in org.xmlcml.euclid that throw EuclidRuntimeException
Modifier and Type	Method and Description
`boolean`	IntSet.`addElement(int value)` add integer Fails if it is outside limits or already exists in set
`void`	IntSet.`addSet(IntSet is)` concatenate sets.
`Transform3`	Point3Vector.`align3PointVectors(Point3Vector ref)` fit two sets of three points.
`Transform3`	Point3Vector.`alignUsing3Points(Point3Vector ref)` fit two coordinates of same length and alignment.
`Angle`	Real2Vector.`angle(int i1, int i2, int i3)` get angle between 3 points
`Angle`	Point3Vector.`angle(int i1, int i2, int i3)` get angle between 3 points.
`Angle`	Real2Vector.`angle(IntSet is)` get angle between 3 points
`Angle`	Point3Vector.`angle(IntSet is)` get angle between 3 points
`void`	IntMatrix.`appendColumnData(IntArray f)` append data to matrix columnwise.
`void`	IntMatrix.`appendColumnData(IntMatrix m)` append data to matrix columnwise.
`void`	RealMatrix.`appendColumnData(RealArray f)` append data to matrix columnwise.
`void`	RealMatrix.`appendColumnData(RealMatrix m)` append data to matrix columnwise.
`void`	IntMatrix.`appendRowData(IntArray f)` append data to matrix rowwise.
`void`	IntMatrix.`appendRowData(IntMatrix m)` append data to matrix rowwise.
`void`	RealMatrix.`appendRowData(RealArray f)` append data to matrix rowwise.
`void`	RealMatrix.`appendRowData(RealMatrix m)` append data to matrix rowwise.
`Plane3`	Point3Vector.`bestPlane()` Deprecated. doesn't work
`static Point3`	Point3.`calculateFromInternalCoordinates(Point3 p1, Point3 p2, Point3 p3, double length, Angle angle, Angle torsion)` add point using internal coordinates.
`static void`	Util.`check(double[] array, int size)` checks array is not null and is of given size.
`static void`	Util.`check(int n, int low, int high)` checks that an in is in the range low to high.
`static void`	RealArray.`check(RealArray array, int size)` checks RealArray is not null and is of given size.
`void`	IntMatrix.`columnwiseDivide(IntArray f)` divide each column of a matrix by a vector of scalars (that is mat[i][j] = mat[i][j] / vect[i] - MODIFIES matrix
`void`	RealMatrix.`columnwiseDivide(RealArray f)` divide each column of a matrix by a vector of scalars (that is mat[i][j] = mat[i][j] / vect[i] - MODIFIES matrix
`int`	RealSquareMatrix.`diagonaliseAndReturnRank(RealArray eigenvalues, RealSquareMatrix eigenvectors, EuclidRuntimeException illCond)` diagonalisation returns eigenvalues and vectors as MODIFIED arguments; 'this' is NOT affected USE JAMA INSTEAD Note that IllCondMatrixException is RETURNED and not thrown
`double`	Real2Vector.`distance(IntSet is)` get distance between 2 points
`double`	Point3Vector.`distance(IntSet is)` get distance between 2 points.
`Complex`	Complex.`divideBy(Complex f)` divide a complex by a complex.
`Polar`	Polar.`divideBy(Polar f)` divide a polar by a polar
`int`	IntArray.`dotProduct(IntArray f)` dot product of two arrays.
`double`	RealArray.`dotProduct(RealArray f)` dot product of two arrays.
`double`	Point3.`elementAt(int n)` subscript operator.
`double`	Real2.`elementAt(int elem)` get either value counts from ZERO
`double`	Vector3.`elementAt(int n)` get component.
`int`	Int2.`elementAt(int elem)` get either value; counts from ZERO
`double`	RealMatrix.`elementAt(Int2 rowcol)` extracts a given element.
`int`	IntMatrix.`elementAt(Int2 rowcol)` extracts a given element.
`double`	RealMatrix.`elementAt(int row, int col)` extracts a given element.
`int`	IntMatrix.`elementAt(int row, int col)` extracts a given element.
`IntMatrix`	IntMatrix.`elementsInRange(IntRange r)` produce a mask of those elements which fall in a range.
`IntMatrix`	RealMatrix.`elementsInRange(RealRange r)` produce a mask of those elements which fall in a range.
`double`	RealMatrix.`euclideanColumnLength(int jcol)` get Euclidean length of column.
`double`	RealMatrix.`euclideanRowLength(int i)` get Euclidean length of row.
`RealArray`	RealMatrix.`extractColumnData(int col)` get column data from matrix.
`IntArray`	IntMatrix.`extractColumnData(int col)` get column data from matrix.
`Real2Array`	RealMatrix.`extractColumns(int col1, int col2)` make an Real2_Array from columns.
`org.xmlcml.euclid.Int2Array`	IntMatrix.`extractColumns(int col1, int col2)` make an Int2_Array from columns.
`RealArray`	RealMatrix.`extractRowData(int row)` get row data from matrix.
`Real2Array`	RealMatrix.`extractRows(int row1, int row2)` make an Real2_Array from rows.
`org.xmlcml.euclid.Int2Array`	IntMatrix.`extractRows(int row1, int row2)` make an Int2_Array from rows.
`RealMatrix`	RealMatrix.`extractSubMatrixData(int low_row, int high_row, int low_col, int high_col)` extract a RealMatrix submatrix from a RealMatrix
`IntMatrix`	IntMatrix.`extractSubMatrixData(int low_row, int high_row, int low_col, int high_col)` extract a IntMatrix submatrix from a IntMatrix
`Transform3`	Point3Vector.`fitTo(Point3Vector ref)` fit two coordinates of same length and alignment CURRENTLY NOT VALIDATED
`static Transform2`	Transform2.`flipAboutVector(Real2 r)` get Transformation to mirror ('flip') across an axis NOT YET CHECKED
`int[]`	Point3Vector.`get3SeparatedPoints()` get three widely separated points.
`RealSquareMatrix`	RealSquareMatrix.`getInverse()` inversion of matrix.
`IntArray`	IntArray.`getReorderedArray(IntSet idx)` get reordered Array.
`RealArray`	RealArray.`getReorderedArray(IntSet idx)` get reordered Array.
`double`	Point3Vector.`getSigmaDeltaSquared(Point3Vector v)` gets sums of squared distances between points.
`IntSet`	IntSet.`getSubscriptedIntSet(IntSet sub)` use another IntSet to subscript this one that is I(new) = I(this) subscripted by I(sub); Result has dimension of I(sub).
`int`	RealMatrix.`indexOfLargestElementInColumn(int jcol)` get index of largest element in column.
`int`	IntMatrix.`indexOfLargestElementInColumn(int jcol)` get index of largest element in column.
`int`	RealMatrix.`indexOfLargestElementInRow(int irow)` get index of largest element in row.
`int`	IntMatrix.`indexOfLargestElementInRow(int irow)` get index of largest element in row.
`int`	RealMatrix.`indexOfSmallestElementInColumn(int jcol)` get index of smallest element in column.
`int`	IntMatrix.`indexOfSmallestElementInColumn(int jcol)` get index of smallest element in column.
`int`	RealMatrix.`indexOfSmallestElementInRow(int irow)` get index of smallest element in row.
`int`	IntMatrix.`indexOfSmallestElementInRow(int irow)` get index of smallest element in row.
`void`	Point3Vector.`inertialAxes(RealArray eigval, RealSquareMatrix eigvect, EuclidRuntimeException illCond)` Deprecated. (doesn't work)
`void`	IntMatrix.`insertColumnData(int after_col, IntArray f)` add data as column or column block into matrix and expand.
`void`	IntMatrix.`insertColumnData(int afterCol, IntMatrix m)` add data as column or column block into matrix and expand.
`void`	RealMatrix.`insertColumnData(int after_col, RealArray f)` add data as column or column block into matrix and expand.
`void`	RealMatrix.`insertColumnData(int afterCol, RealMatrix m)` add data as column or column block into matrix and expand.
`void`	IntMatrix.`insertRowData(int after_row, IntArray f)` insert row of data into matrix and expand.
`void`	IntMatrix.`insertRowData(int afterRow, IntMatrix m)` insert 2 or more adjacent rows of data into matrix and expand
`void`	RealMatrix.`insertRowData(int after_row, RealArray f)` insert row of data into matrix and expand.
`void`	RealMatrix.`insertRowData(int afterRow, RealMatrix m)` insert 2 or more adjacent rows of data into matrix and expand
`double`	RealMatrix.`largestElementInColumn(int jcol)` get value of largest element in a column
`int`	IntMatrix.`largestElementInColumn(int jcol)` get value of largest element in a column
`double`	RealMatrix.`largestElementInRow(int irow)` get value of largest element in a row.
`int`	IntMatrix.`largestElementInRow(int irow)` get value of largest element in a row.
`IntArray`	IntMatrix.`multiply(IntArray f)` matrix multiplication of a COLUMN vector.
`IntMatrix`	IntMatrix.`multiply(IntMatrix m)` matrix multiplication.
`IntSquareMatrix`	IntSquareMatrix.`multiply(IntSquareMatrix m)` matrix multiplication.
`RealArray`	RealMatrix.`multiply(RealArray f)` matrix multiplication of a COLUMN vector.
`RealMatrix`	RealMatrix.`multiply(RealMatrix m)` matrix multiplication.
`RealSquareMatrix`	RealSquareMatrix.`multiply(RealSquareMatrix m)` matrix multiplication.
`void`	IntMatrix.`multiplyEquals(IntMatrix m)` matrix multiplication.
`void`	RealMatrix.`multiplyEquals(RealMatrix m)` matrix multiplication.
`void`	RealSquareMatrix.`orthogonalise()` orthogonalise matrix.
`static String`	Util.`outputFloat(int nPlaces, int nDec, double value)` format for example f8.3 this is a mess; if cannot fit, then either right-truncates or when that doesn't work, returns ****
`IntArray`	IntArray.`plus(IntArray f)` adds arrays.
`IntMatrix`	IntMatrix.`plus(IntMatrix m2)` matrix addition.
`IntSquareMatrix`	IntSquareMatrix.`plus(IntSquareMatrix m)` matrix addition.
`Point3Vector`	Point3Vector.`plus(Point3Vector pv2)` form the point+point sum for two vectors of points
`RealArray`	RealArray.`plus(RealArray f)` adds arrays.
`RealMatrix`	RealMatrix.`plus(RealMatrix m2)` matrix addition.
`RealSquareMatrix`	RealSquareMatrix.`plus(RealSquareMatrix m)` matrix addition.
`void`	RealArray.`plusEquals(RealArray f)` adds arrays.
`Vector3`	Vector3.`projectOnto(Vector3 v)` projection of this onto vector.
`RealMatrix`	RealMatrix.`reorderColumnsBy(IntSet is)` reorder the columns of a matrix.
`IntMatrix`	IntMatrix.`reorderColumnsBy(IntSet is)` reorder the columns of a matrix.
`RealMatrix`	RealMatrix.`reorderRowsBy(IntSet is)` reorder the rows of a matrix Deleting rows is allowed
`IntMatrix`	IntMatrix.`reorderRowsBy(IntSet is)` reorder the rows of a matrix Deleting rows is allowed
`void`	RealMatrix.`replaceColumnData(int starting_col, double[] f)` replace data in a single column.
`void`	IntMatrix.`replaceColumnData(int starting_col, int[] f)` replace data in a single column.
`void`	IntMatrix.`replaceColumnData(int column, IntArray f)` replace data in a single column.
`void`	IntMatrix.`replaceColumnData(int start_column, IntMatrix m)` replace data in a block of columns.
`void`	RealMatrix.`replaceColumnData(int column, RealArray f)` replace data in a single column.
`void`	RealMatrix.`replaceColumnData(int start_column, RealMatrix m)` replace data in a block of columns.
`void`	RealMatrix.`replaceRowData(int row, double[] f)` overwrite existing row of data.
`void`	IntMatrix.`replaceRowData(int row, int[] f)` overwrite existing row of data.
`void`	IntMatrix.`replaceRowData(int row, IntArray f)` overwrite existing row of data.
`void`	IntMatrix.`replaceRowData(int afterRow, IntMatrix m)` overwrite existing block of rows; if too big, copying is truncated
`void`	RealMatrix.`replaceRowData(int row, RealArray f)` overwrite existing row of data.
`void`	RealMatrix.`replaceRowData(int afterRow, RealMatrix m)` overwrite existing block of rows; if too big, copying is truncated
`double`	RealArray.`rms()` root mean square sqrt(sigma(x(i)**2)/n)
`Transform3`	Point3Vector.`roughAlign(Point3Vector ref)` fit two coordinates of same length and alignment.
`void`	Real2Vector.`set(int i, Real2 v)`
`void`	Point3.`setElementAt(int n, double d)` sets element.
`void`	Vector3.`setElementAt(int n, double f)` set component.
`void`	RealMatrix.`setElementAt(int row, int col, double f)` sets a given element MODIFIES matrix
`void`	IntMatrix.`setElementAt(int row, int col, int f)` sets a given element MODIFIES matrix
`void`	Point3Vector.`setElementAt(Vector3 v, int i)` sets a given coordinate (i) to vector
`void`	IntSet.`setMax(int max)` set maximum allowed value.
`void`	IntSquareMatrix.`shallowCopy(IntSquareMatrix m)` shallowCopy an existing square matrix.
`void`	RealSquareMatrix.`shallowCopy(RealSquareMatrix m)` shallowCopy an existing square matrix.
`double`	RealMatrix.`smallestElement()` get value of smallest element.
`int`	IntMatrix.`smallestElement()` get value of smallest element.
`double`	RealMatrix.`smallestElementInColumn(int jcol)` get smallest element in a column.
`int`	IntMatrix.`smallestElementInColumn(int jcol)` get smallest element in a column.
`double`	RealMatrix.`smallestElementInRow(int irow)` get smallest element in a row.
`int`	IntMatrix.`smallestElementInRow(int irow)` get smallest element in a row.
`static double[]`	Util.`splitToDoubleArray(String s, String delim)` splits string into doubles.
`static int[]`	Util.`splitToIntArray(String s, String delim)` splits string into ints.
`Real2Vector`	Real2Vector.`subArray(IntSet is)` create a NEW subset of the points; points are COPIED
`Point3Vector`	Point3Vector.`subArray(IntSet is)` create a NEW subset of the points; points are COPIED
`IntArray`	IntArray.`subtract(IntArray f)` subtracts arrays.
`IntMatrix`	IntMatrix.`subtract(IntMatrix m2)` matrix subtraction.
`IntSquareMatrix`	IntSquareMatrix.`subtract(IntSquareMatrix m)` matrix subtraction.
`Point3Vector`	Point3Vector.`subtract(Point3Vector pv2)` form the point+point difference for two vectors of points
`RealArray`	RealArray.`subtract(RealArray f)` subtracts arrays.
`RealMatrix`	RealMatrix.`subtract(RealMatrix m2)` matrix subtraction.
`RealSquareMatrix`	RealSquareMatrix.`subtract(RealSquareMatrix m)` matrix subtraction.
`void`	IntArray.`subtractEquals(IntArray f)` array subtraction.
`void`	RealArray.`subtractEquals(RealArray f)` array subtraction.
`Angle`	Point3Vector.`torsion(int i1, int i2, int i3, int i4)` get torsion angle between 4 points.
`Angle`	Point3Vector.`torsion(IntSet is)` get torsion angle between 4 points.
`void`	RealMatrix.`translateByColumn(double[] d)` subtract value from each colum.
`void`	IntMatrix.`translateByColumn(int[] d)` subtract value from each colum.
`RealArray`	RealArray.`unitVector()` get unit vector

Constructors in org.xmlcml.euclid that throw EuclidRuntimeException
Constructor and Description
`IntArray(IntArray ref, IntArray sub)` create mixed sliced array.
`IntArray(IntArray m, int low, int high)` create from subarray of another Array.
`IntArray(int n, int[] arr)` create Array from part of java array.
`IntMatrix(int[][] m)` create from a java matrix.
`IntMatrix(int rows, int cols, int[] array)` Create from 1-D array.
`IntMatrix(IntMatrix m, int lowrow, int hirow, int lowcol, int hicol)` create from submatrix of another matrix.
`IntSet(int[] is)` make from an int[] - all values must be distinct;
`IntSquareMatrix(int[][] matrix)` constructor from array.
`IntSquareMatrix(IntMatrix m)` shallow copy from IntMatrix the array values are not copied (only the reference)
`IntSquareMatrix(IntMatrix m, int lowrow, int lowcol, int rows)` Constructor for submatrix of another matrix.
`Plane3(double[] array)` construct from array.
`Plane3(double[] lmn, double d)` formed from components.
`Plane3(double l, double m, double n, double d)` formed from components.
`Plane3(Line3 l, Point3 p)` make a plane from a line and a point not on the line.
`Plane3(Point3 p1, Point3 p2, Point3 p3)` make a plane from three points.
`Plane3(Vector3 v, double d)` formed from plane and distance.
`Point3(double[] f)` constructor from a double[] (or a RealArray).
`Point3Vector(double[] flarray)` constructor.
`Point3Vector(int n, double[] x, double[] y, double[] z)` from three parallel arrays of x, y and z - by REFERENCE
`Point3Vector(RealArray m)` constructor from RealArray - by REFERENCE
`Real2Array(RealArray x, RealArray y)` make an Real2_Array from 2 RealVec's; takes a copy
`Real2Vector(double[] flarray)` Formed by feeding in an existing array to a 2xn matrix THE COLUMN IS THE FASTEST MOVING INDEX, that is the matrix is filled as flarray(0,0, flarray(0,1).
`Real2Vector(int n, double[] x, double[] y)` from two parallel arrays of x, y - by REFERENCE.
`Real2Vector(RealArray m)` constructor from RealArray - by REFERENCE
`RealArray(int n, double[] arr)` create Array from part of java array.
`RealArray(RealArray ref, IntArray sub)` create mixed sliced array.
`RealArray(RealArray m, int low, int high)` create from subarray of another Array.
`RealArray(String[] strings)` construct from an array of Strings.
`RealMatrix(double[][] m)` create from a java matrix.
`RealMatrix(int rows, int cols, double[] array)` Create from 1-D array.
`RealMatrix(RealMatrix m, int lowrow, int hirow, int lowcol, int hicol)` create from submatrix of another matrix.
`RealSquareMatrix(double[][] matrix)` constructor from array.
`RealSquareMatrix(int rows, double[] array)` Creates real square matrix from array THE COLUMN IS THE FASTEST MOVING INDEX, that is the matrix is filled as mat(0,0), mat(0,1) ...
`RealSquareMatrix(RealMatrix m)` shallow copy from RealMatrix the array values are not copied (only the reference)
`RealSquareMatrix(RealMatrix m, int lowrow, int lowcol, int rows)` Constructor for submatrix of another matrix.
`Transform2(double[] array)` construct from an array.
`Transform2(RealSquareMatrix m)` from a 2x2 or 3x3 matrix
`Transform2(RealSquareMatrix m, Vector2 v)` from a 2x2 rotation matrix and a translation vector
`Transform2(Vector2 v1, Vector2 v2)` rotation of one vector onto another
`Transform3(double[] array)` From array.
`Transform3(RealSquareMatrix m)` from a matrix.
`Transform3(RealSquareMatrix m, Vector3 v)` from a matrix and vector.
`Transform3(String opString)` from a crystallographic operator.
`Vector3(double[] array)` construct from vector components.
`Vector3(RealArray f)` copy constructor from RealArray.

Uses of Classorg.xmlcml.euclid.EuclidRuntimeException

Uses of EuclidRuntimeException in org.xmlcml.euclid

Uses of Class
org.xmlcml.euclid.EuclidRuntimeException