Uses of Class
org.xmlcml.euclid.RealArray

Packages that use RealArray

Package	Description
org.xmlcml.euclid
org.xmlcml.stml

Uses of RealArray in org.xmlcml.euclid

Methods in org.xmlcml.euclid that return RealArray

Modifier and Type	Method and Description
RealArray	RealArray.addScalar(double f) add a scalar to all elements.
RealArray	RealArray.applyFilter(RealArray filter) apply filter.
RealArray	RealArray.calculateDifferences() calculate differences between elements i and i+1
RealArray	RealSquareMatrix.calculateEigenvalues()
static RealArray	RealArray.createRealArray(int[] integers) casts an integer array to RealArray
static RealArray	RealArray.createRealArray(IntArray intArray) casts an integer array to RealArray
static RealArray	RealArray.createRealArray(List<String> stringList) interprets list of Strings as numbers.
RealArray	RealArray.createReorderedArray(IntSet intSet) create new reordered array.
RealArray	RealArray.createScaledArrayToRange(double x0, double x1) creates scaled array so it runs spans new Range.
RealArray	RealArray.createScaledArrayToRange(double thisX0, double thisX1, double targetX0, double targetX1) creates scaled array so it runs spans new Range.
RealArray	RealArray.cumulativeSum() cumulative sum of array.
RealArray	Point3Vector.deviationsFromPlane(Plane3 p) get deviations of coordinates from plane
RealArray	RealMatrix.euclideanColumnLengths() get array of Euclidean column lengths
RealArray	RealMatrix.euclideanRowLengths() get array of Euclidean row lengths.
RealArray	RealMatrix.extractColumnData(int col) get column data from matrix.
RealArray	Point3Vector.extractRealArray()
RealArray	RealMatrix.extractRowData(int row) get row data from matrix.
RealArray	RealArray.format(int places) round to decimal places.
RealArray	UnivariateBin.getArray()
RealArray	Univariate.getDeviateValues() get deviate values.
static RealArray	RealArray.getFilter(int halfWidth, RealArray.Filter function) creates a filter based on Gaussian and derivatives.
RealArray	RealRangeArray.getGaps()
RealArray	Univariate.getMedianBinValuesSortedByFrequency() this sorts the bins in order of frequency.
RealArray	Univariate.getMedianXValues() gets the median xvalues for the bins.
RealArray	RealArray.getNormalDistribution(double sigma) creates a normal distribution about a mean.
RealArray	Bivariate.getNormalizedResiduals()
RealArray	Univariate.getNormalizedValues() get normalized values.
RealArray	RealArray.getReorderedArray(IntSet idx) get reordered Array.
RealArray	Bivariate.getResiduals()
RealArray	Transform2.getScales() get scales (as a 2-element RealArray)
RealArray	Transform3.getScales() get scales.
RealArray	RealArray.getSubArray(int start, int end) get array slice.
static RealArray	RealArray.getSymmetricalArray(double mid, int nsteps, double halfrange) gets range distributed about a midpoint.
RealArray	Real2Array.getXArray() extract X array.
RealArray	Real2Vector.getXArray() get the X coordinate array
RealArray	Real2Vector.getXorY(Axis.Axis2 axis) get a single coordinate array - for example all x-coordinates
RealArray	Univariate.getXValues() gets the xvalues for the bins.
RealArray	Real2Vector.getXY() get the coordinate coordinate array as doubles x,y,x,y,
RealArray	Point3Vector.getXYZ() get the coordinate coordinate array as doubles x,y,z,x,y,z,
RealArray	Point3Vector.getXYZ(Axis.Axis3 axis) get a single coordinate array for example all x-coordinates
RealArray	Real2Array.getYArray() extract Y array.
RealArray	Real2Vector.getYArray() get the Y coordinate array
RealArray	RealSquareMatrix.lowerTriangle() copy lower triangle into linear array; order: 0,0; 1,0; 1,1; 2,0
RealArray	RealMatrix.multiply(RealArray f) matrix multiplication of a COLUMN vector.
RealArray	RealArray.multiplyBy(double f) array multiplication by a scalar.
RealArray	RealArray.plus(double f) add a scalar to each element.
RealArray	RealArray.plus(RealArray f) adds arrays.
RealArray	RealArray.scaleAndInterpolate(int newNelem) Deprecated.
RealArray	RealArray.shiftOriginToRight(double delta) assumes all elements are equally spaced with "x" separation of 1.0.
RealArray	RealArray.shiftOriginToRightOld(double delta) assumes all elements are equally spaced with "x" separation of 1.0.
RealArray	RealArray.subtract(RealArray f) subtracts arrays.
RealArray	RealArray.trim(ArrayBase.Trim flag, double limit) trims array to lie within limit.
RealArray	RealArray.unitVector() get unit vector

Methods in org.xmlcml.euclid with parameters of type RealArray

Modifier and Type	Method and Description
void	RealArray.addArray(RealArray f) append elements.
void	RealMatrix.appendColumnData(RealArray f) append data to matrix columnwise.
void	RealMatrix.appendRowData(RealArray f) append data to matrix rowwise.
RealArray	RealArray.applyFilter(RealArray filter) apply filter.
static void	RealArray.check(RealArray array, int size) checks RealArray is not null and is of given size.
void	RealMatrix.columnwiseDivide(RealArray f) divide each column of a matrix by a vector of scalars (that is mat[i][j] = mat[i][j] / vect[i] - MODIFIES matrix
static Real2Array	Real2Array.createFromPairs(RealArray ra) make an Real2_Array from pairs of numbers x1,y1 ..
static RealSquareMatrix	RealSquareMatrix.diagonal(RealArray f) create diagonal matrix from real matrix.
int	RealSquareMatrix.diagonaliseAndReturnRank(RealArray eigenvalues, RealSquareMatrix eigenvectors, EuclidRuntimeException illCond) diagonalisation returns eigenvalues and vectors as MODIFIED arguments; 'this' is NOT affected USE JAMA INSTEAD Note that IllCondMatrixException is RETURNED and not thrown
double	RealArray.dotProduct(RealArray f) dot product of two arrays.
boolean	RealArray.equals(RealArray f, double epsilon) are two arrays equal.
static RealSquareMatrix	RealSquareMatrix.fromLowerTriangle(RealArray f) create square matrix from lower triangle values upper triangle is filled with zeros
static RealSquareMatrix	RealSquareMatrix.fromUpperTriangle(RealArray f) create square matrix from lower triangle lower triangle is filled with zeros
double	RealArray.getRandomVariate(RealArray distribution, RealArray cumulativeDistribution) gets a variate from a distribution.
void	Point3Vector.inertialAxes(RealArray eigval, RealSquareMatrix eigvect, EuclidRuntimeException illCond) Deprecated. (doesn't work)
void	RealArray.insertArray(int elem, RealArray f) insert an array and expand.
void	RealMatrix.insertColumnData(int after_col, RealArray f) add data as column or column block into matrix and expand.
void	RealMatrix.insertRowData(int after_row, RealArray f) insert row of data into matrix and expand.
boolean	RealArray.isEqualTo(RealArray f) are two arrays equal.
double	RealArray.lineSearch(double probe, RealArray distribution) binary search on monotonic increasing distribution.
RealArray	RealMatrix.multiply(RealArray f) matrix multiplication of a COLUMN vector.
static RealSquareMatrix	RealSquareMatrix.outerProduct(RealArray f) Creates square matrix from real matrix.
RealArray	RealArray.plus(RealArray f) adds arrays.
void	RealArray.plusEquals(RealArray f) adds arrays.
void	RealMatrix.replaceColumnData(int column, RealArray f) replace data in a single column.
void	RealMatrix.replaceRowData(int row, RealArray f) overwrite existing row of data.
void	Univariate.setArray(RealArray realArray) sets data copies realArray
RealArray	RealArray.subtract(RealArray f) subtracts arrays.
void	RealArray.subtractEquals(RealArray f) array subtraction.
double	RealArray.sumProductOfAllElements(RealArray yarr) sum all product of elements.

Constructors in org.xmlcml.euclid with parameters of type RealArray

Constructor and Description
Point3Vector(RealArray m) constructor from RealArray - by REFERENCE
Real2Array(RealArray x, RealArray y) make an Real2_Array from 2 RealVec's; takes a copy
Real2Vector(RealArray m) constructor from RealArray - by REFERENCE
RealArray(RealArray m) copy constructor.
RealArray(RealArray ref, IntArray sub) create mixed sliced array.
RealArray(RealArray m, int low, int high) create from subarray of another Array.
Univariate(RealArray realArray) creates from data array.
Vector3(RealArray f) copy constructor from RealArray.

Uses of RealArray in org.xmlcml.stml

Constructors in org.xmlcml.stml with parameters of type RealArray

Constructor and Description
STMLArray(RealArray array) formed from components.