Constant Field Values

Contents

• org.broadinstitute.*

org.broadinstitute.*

org.broadinstitute.hellbender.utils.bwa.BwaMemAligner

Modifier and Type	Constant Field	Value
public static final int	MEM_F_ALL	8
public static final int	MEM_F_NO_MULTI	16
public static final int	MEM_F_NO_RESCUE	32
public static final int	MEM_F_NOPAIRING	4
public static final int	MEM_F_PE	2
public static final int	MEM_F_PRIMARY5	2048
public static final int	MEM_F_REF_HDR	256
public static final int	MEM_F_SMARTPE	1024
public static final int	MEM_F_SOFTCLIP	512

org.broadinstitute.hellbender.utils.bwa.BwaMemIndex

Modifier and Type	Constant Field	Value
public static final java.lang.String	IMAGE_FILE_EXTENSION	".img"

org.broadinstitute.hellbender.utils.bwa.BwaMemPairEndStats

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_LOW_AND_HIGH_SIGMA	4
public static final double	DEFAULT_STD_TO_AVERAGE_RATIO	0.1