org.broadinstitute.hellbender.utils.bwa

Classes

• BwaMemAligner
• BwaMemAlignment
• BwaMemIndex
• BwaMemPairEndStats

Enums

• BwaMemIndex.Algorithm

Exceptions

• CouldNotCreateIndexException
• CouldNotCreateIndexImageException
• CouldNotReadImageException
• CouldNotReadIndexException
• CouldNotReadReferenceException
• InvalidFileFormatException
• InvalidInputException