| Class | Description |
|---|---|
| BwaMemAligner |
Given an open index, this class lets you do alignment of sequences.
|
| BwaMemAlignment |
Info from the Aligner about an alignment to reference that it discovered for some sequence.
|
| BwaMemIndex |
BwaMemIndex manages the mapping of a bwa index image file into (non-Java) memory.
|
| BwaMemPairEndStats |
Equivalent to Bwa's mem_pestat_t struct.
|
| Enum | Description |
|---|---|
| BwaMemIndex.Algorithm |
Indexing algorithms supported by Bwa.
|
| Exception | Description |
|---|---|
| CouldNotCreateIndexException |
Created by valentin on 7/29/17.
|
| CouldNotCreateIndexImageException |
Created by valentin on 7/30/17.
|
| CouldNotReadImageException |
Created by valentin on 7/30/17.
|
| CouldNotReadIndexException |
Created by valentin on 7/30/17.
|
| CouldNotReadReferenceException |
Created by valentin on 7/30/17.
|
| InvalidFileFormatException |
Created by valentin on 7/28/17.
|
| InvalidInputException |
Created by valentin on 7/28/17.
|