Hierarchy For All Packages

Package Hierarchies:

• org.broadinstitute.hellbender.utils.bwa

Class Hierarchy

• java.lang.Object
  • org.broadinstitute.hellbender.utils.bwa.BwaMemAligner (implements java.lang.AutoCloseable)
  • org.broadinstitute.hellbender.utils.bwa.BwaMemAlignment
  • org.broadinstitute.hellbender.utils.bwa.BwaMemIndex (implements java.lang.AutoCloseable)
  • org.broadinstitute.hellbender.utils.bwa.BwaMemPairEndStats
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • org.broadinstitute.hellbender.utils.bwa.CouldNotCreateIndexException
        • org.broadinstitute.hellbender.utils.bwa.CouldNotCreateIndexImageException
        • org.broadinstitute.hellbender.utils.bwa.CouldNotReadImageException
        • org.broadinstitute.hellbender.utils.bwa.CouldNotReadIndexException
        • org.broadinstitute.hellbender.utils.bwa.CouldNotReadReferenceException
        • org.broadinstitute.hellbender.utils.bwa.InvalidInputException
          • org.broadinstitute.hellbender.utils.bwa.InvalidFileFormatException

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.broadinstitute.hellbender.utils.bwa.BwaMemIndex.Algorithm