A

accept(File, String) - Method in class org.cleartk.util.cr.RegexFileFilter

Checks to see if the filename matches one of the regular expressions.

accept(File) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories

 

accept(File, String) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories

 

accept(File) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles

 

accept(File, String) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles

 

addChild(TreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode

 

addToBuffer(String) - Method in class org.cleartk.util.InputStreamHandler

 

AnnotationUtil - Class in org.cleartk.util

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

AnnotationUtil() - Constructor for class org.cleartk.util.AnnotationUtil

 

AnnotationWriter<ANNOTATION_TYPE extends Annotation> - Interface in org.cleartk.util.ae.linewriter

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

ARCH_PPC - Static variable in class org.cleartk.util.PlatformDetection

 

ARCH_X86_32 - Static variable in class org.cleartk.util.PlatformDetection

 

ARCH_X86_64 - Static variable in class org.cleartk.util.PlatformDetection

 

B

BaseConversion - Class in org.cleartk.util

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

BaseConversion() - Constructor for class org.cleartk.util.BaseConversion

 

BlankLineBlockWriter - Class in org.cleartk.util.ae.linewriter.block

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

BlankLineBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter

 

BlockWriter<BLOCK_TYPE extends Annotation> - Interface in org.cleartk.util.ae.linewriter

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

C

checkTypeParameterIsAssignable(Class<T>, String, T, Class<U>, String, U) - Static method in class org.cleartk.util.ReflectionUtil

Checks that the given type parameters of the given objects are compatible.

checkTypeParametersAreEqual(Class<T>, String, T, Class<U>, String, U, Class<E>) - Static method in class org.cleartk.util.ReflectionUtil

Checks that the given type parameters of the given objects are exactly equal.

cleanUPRegex1 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser

 

cleanUPRegex2 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser

 

cleanUPRegex3 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser

 

cleanUPRegex4 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser

 

CleartkInitializationException - Exception in org.cleartk.util

Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

CleartkInitializationException(String, String, Object...) - Constructor for exception org.cleartk.util.CleartkInitializationException

 

CleartkInitializationException(Throwable, String, String, Object...) - Constructor for exception org.cleartk.util.CleartkInitializationException

 

close() - Method in class org.cleartk.util.cr.FilesCollectionReader

 

close() - Method in class org.cleartk.util.cr.linereader.LineReader

 

collectionProcessComplete() - Method in class org.cleartk.util.ae.linewriter.LineWriter

 

completed - Variable in class org.cleartk.util.cr.FilesCollectionReader

 

CompressedStringBiMap - Class in org.cleartk.util.collection

Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.

CompressedStringBiMap() - Constructor for class org.cleartk.util.collection.CompressedStringBiMap

 

contains(Annotation, Annotation) - Static method in class org.cleartk.util.AnnotationUtil

 

convertBase(int, int) - Static method in class org.cleartk.util.BaseConversion

 

countFiles(Iterator<File>) - Method in class org.cleartk.util.cr.FilesCollectionReader

 

CoveredTextAnnotationWriter - Class in org.cleartk.util.ae.linewriter.annotation

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

CoveredTextAnnotationWriter() - Constructor for class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter

 

createFileIterator() - Method in class org.cleartk.util.cr.FilesCollectionReader

 

currentFile - Variable in class org.cleartk.util.cr.FilesCollectionReader

 

D

DefaultLineHandler - Class in org.cleartk.util.cr.linereader

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

DefaultLineHandler() - Constructor for class org.cleartk.util.cr.linereader.DefaultLineHandler

 

delegate() - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

displayText() - Method in class org.cleartk.util.treebank.TreebankNode

 

DocumentIdBlockWriter - Class in org.cleartk.util.ae.linewriter.block

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

DocumentIdBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter

 

DoNothingBlockWriter - Class in org.cleartk.util.ae.linewriter.block

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

DoNothingBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter

 

E

editDistance(String, String) - Static method in class org.cleartk.util.similarity.Levenshtein

 

F

fileNotFound(File) - Static method in exception org.cleartk.util.CleartkInitializationException

 

files - Variable in class org.cleartk.util.cr.FilesCollectionReader

 

FilesCollectionReader - Class in org.cleartk.util.cr

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

FilesCollectionReader() - Constructor for class org.cleartk.util.cr.FilesCollectionReader

 

filesCount - Variable in class org.cleartk.util.cr.FilesCollectionReader

 

fileToUri - Variable in class org.cleartk.util.cr.UriCollectionReader

 

finalizeMap() - Method in class org.cleartk.util.collection.GenericStringMapper

 

finalizeMap() - Method in interface org.cleartk.util.collection.StringMapper

 

forcePut(String, String) - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

G

GenericStringMapper - Class in org.cleartk.util.collection

Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.

GenericStringMapper(int) - Constructor for class org.cleartk.util.collection.GenericStringMapper

 

GenKeyBiMap<K,V> - Interface in org.cleartk.util.collection

Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.

getAncestor(int) - Method in class org.cleartk.util.treebank.TreebankNode

 

getAnnotationsExtent(List<? extends Annotation>) - Static method in class org.cleartk.util.AnnotationUtil

 

getArch() - Method in class org.cleartk.util.PlatformDetection

 

getBuffer() - Method in class org.cleartk.util.InputStreamHandler

 

getChildren() - Method in class org.cleartk.util.treebank.TreebankNode

 

getCollectionReader(String) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getCollectionReaderFromDirectory(File) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getCollectionReaderFromDirectory(File, Class<? extends IOFileFilter>, Class<? extends IOFileFilter>) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getCollectionReaderFromFiles(Collection<File>) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getCollectionReaderFromUris(Collection<URI>) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getCollectionReaderWithPatterns(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getCollectionReaderWithSuffixes(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getCollectionReaderWithView(String, String) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getCreateViewAggregateDescription(String) - Static method in class org.cleartk.util.ae.UriToXmiCasAnnotator

Use this aggregate description if UriToDocumentTextAnnotator will be writing to a mapped view.

getDescription(Class<? extends Annotation>) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

getDescription(Class<? extends Annotation>, Class<? extends Annotation>) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

getDescription(Class<? extends Annotation>, Class<? extends Annotation>, char, char) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

getDescription() - Static method in class org.cleartk.util.ae.UriToDocumentTextAnnotator

 

getDescription() - Static method in class org.cleartk.util.ae.UriToXmiCasAnnotator

 

getDescription(File) - Static method in class org.cleartk.util.ae.XmiWriter

 

getDescription(String) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getDescription(File) - Static method in class org.cleartk.util.cr.linereader.LineReaderXmiWriter

 

getDescriptionForView(String) - Static method in class org.cleartk.util.ae.UriToDocumentTextAnnotator

This description will read the contents into the specify view.

getDescriptionFromDirectory(File) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getDescriptionFromDirectory(File, Class<? extends IOFileFilter>, Class<? extends IOFileFilter>) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getDescriptionFromFiles(Collection<File>) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getDescriptionFromUris(Collection<URI>) - Static method in class org.cleartk.util.cr.UriCollectionReader

 

getDescriptionWithPatterns(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getDescriptionWithSuffixes(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getDescriptionWithView(String, String) - Static method in class org.cleartk.util.cr.FilesCollectionReader

 

getExecutableSuffix() - Method in class org.cleartk.util.PlatformDetection

 

getInputStream(Class<?>, String) - Static method in class org.cleartk.util.IoUtil

This method attempts to create an input stream from the given path by: Trying to parse it as a URL Trying to find it on the classpath, relative to the given class Trying to find it as a file on the file system

getInputStreamAsBufferedString(InputStream) - Static method in class org.cleartk.util.InputStreamHandler

 

getInputStreamAsList(InputStream) - Static method in class org.cleartk.util.InputStreamHandler

 

getInteger(String) - Method in class org.cleartk.util.collection.GenericStringMapper

 

getInteger(String) - Method in interface org.cleartk.util.collection.StringMapper

 

getLeafNode(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

Uses the leafNodePattern to identify a string as a terminal.

getNext(JCas) - Method in class org.cleartk.util.cr.FilesCollectionReader

 

getNext(JCas) - Method in class org.cleartk.util.cr.linereader.LineReader

 

getNext(JCas) - Method in class org.cleartk.util.cr.UriCollectionReader

 

getNext(JCas) - Method in class org.cleartk.util.cr.XReader

 

getOrGenerateInteger(String) - Method in class org.cleartk.util.collection.GenericStringMapper

 

getOrGenerateInteger(String) - Method in interface org.cleartk.util.collection.StringMapper

 

getOrGenerateKey(String) - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

getOrGenerateKey(V) - Method in interface org.cleartk.util.collection.GenKeyBiMap

 

getOs() - Method in class org.cleartk.util.PlatformDetection

 

getParameterValue(String, String) - Static method in class org.cleartk.util.ParamUtil

 

getParent() - Method in class org.cleartk.util.treebank.TreebankNode

 

getParseBegin() - Method in class org.cleartk.util.treebank.TreebankNode

 

getParseEnd() - Method in class org.cleartk.util.treebank.TreebankNode

 

getProgress() - Method in class org.cleartk.util.cr.FilesCollectionReader

 

getProgress() - Method in class org.cleartk.util.cr.linereader.LineReader

 

getProgress() - Method in class org.cleartk.util.cr.UriCollectionReader

 

getSurroundingText(JCas, Annotation, Class<TOKEN_TYPE>, int, boolean) - Static method in class org.cleartk.util.AnnotationUtil

This method provides a way of getting some text before or after an annotation specified by some "window" of "tokens".

getTags() - Method in class org.cleartk.util.treebank.TreebankNode

 

getTerminal(int) - Method in class org.cleartk.util.treebank.TopTreebankNode

 

getTerminalCount() - Method in class org.cleartk.util.treebank.TopTreebankNode

 

getText() - Method in class org.cleartk.util.treebank.TreebankNode

 

getText() - Method in interface org.cleartk.util.treebank.TreebankObject

 

getTextBegin() - Method in class org.cleartk.util.treebank.TreebankNode

 

getTextEnd() - Method in class org.cleartk.util.treebank.TreebankNode

 

getTopNode() - Method in class org.cleartk.util.treebank.TreebankNode

 

getTreebankParse() - Method in class org.cleartk.util.treebank.TopTreebankNode

 

getTreebankParse() - Method in class org.cleartk.util.treebank.TreebankNode

 

getType(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

Returns the type of a constituent of some fragment of a treebank parse.

getType() - Method in class org.cleartk.util.treebank.TreebankNode

 

getTypeArgument(Class<T>, String, T) - Static method in class org.cleartk.util.ReflectionUtil

 

getTypeArguments(Class<?>, Object) - Static method in class org.cleartk.util.ReflectionUtil

Try to find the instantiation of all of genericTypes type parameters in objs class.

getTypeArguments(Class<?>) - Method in interface org.cleartk.util.ReflectionUtil.TypeArgumentDelegator

 

getURI(JCas) - Static method in class org.cleartk.util.ViewUriUtil

Get the primary Uniform Resource Identifier for this JCas and all its views.

getValue() - Method in class org.cleartk.util.treebank.TreebankNode

 

getXmiFile(JCas) - Method in class org.cleartk.util.ae.XmiWriter

 

getXmiFile(JCas) - Method in class org.cleartk.util.cr.linereader.LineReaderXmiWriter

 

H

handleLine(JCas, File, File, String) - Method in class org.cleartk.util.cr.linereader.DefaultLineHandler

 

handleLine(JCas, File, File, String) - Method in interface org.cleartk.util.cr.linereader.LineHandler

 

handleLine(JCas, File, File, String) - Method in class org.cleartk.util.cr.linereader.SimpleLineHandler

 

hasNext() - Method in class org.cleartk.util.cr.FilesCollectionReader

 

hasNext() - Method in class org.cleartk.util.cr.linereader.LineReader

 

hasNext() - Method in class org.cleartk.util.cr.UriCollectionReader

 

I

incompatibleTypeParameterAndType(Object, String, Type, Class<?>) - Static method in exception org.cleartk.util.CleartkInitializationException

 

incompatibleTypeParameters(Object, String, Type, Object, String, Type) - Static method in exception org.cleartk.util.CleartkInitializationException

 

inferPlainText(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

A treebank parse does not preserve whitespace information.

initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter

 

initialize(UimaContext) - Method in interface org.cleartk.util.ae.linewriter.AnnotationWriter

 

initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter

 

initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter

 

initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter

 

initialize(UimaContext) - Method in interface org.cleartk.util.ae.linewriter.BlockWriter

 

initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.LineWriter

 

initialize(UimaContext) - Method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

initialize(UimaContext) - Method in class org.cleartk.util.ae.PlainTextWriter

 

initialize(UimaContext) - Method in class org.cleartk.util.cr.FilesCollectionReader

 

initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.DefaultLineHandler

 

initialize(UimaContext) - Method in interface org.cleartk.util.cr.linereader.LineHandler

 

initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.LineReader

 

initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.SimpleLineHandler

 

initialize(UimaContext) - Method in class org.cleartk.util.cr.UriCollectionReader

 

initialize(UimaContext) - Method in class org.cleartk.util.cr.XReader

 

initTerminalNodes() - Method in class org.cleartk.util.treebank.TopTreebankNode

 

InputStreamHandler<T> - Class in org.cleartk.util

Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.

invalidParameterValueSelectFrom(String, List<?>, Object) - Static method in exception org.cleartk.util.CleartkInitializationException

 

inverse() - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

IoUtil - Class in org.cleartk.util

Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

IoUtil() - Constructor for class org.cleartk.util.IoUtil

 

isAssignableFrom(Type, Type) - Static method in class org.cleartk.util.ReflectionUtil

 

isLeaf() - Method in class org.cleartk.util.treebank.TreebankNode

 

L

LEAF_NODE_REGEX - Static variable in class org.cleartk.util.treebank.TreebankFormatParser

used to identify tokens in Penn Treebank labeled constituents.

Levenshtein - Class in org.cleartk.util.similarity

Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

Levenshtein() - Constructor for class org.cleartk.util.similarity.Levenshtein

 

LineHandler - Interface in org.cleartk.util.cr.linereader

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

LineReader - Class in org.cleartk.util.cr.linereader

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

LineReader() - Constructor for class org.cleartk.util.cr.linereader.LineReader

 

LineReaderXmiWriter - Class in org.cleartk.util.cr.linereader

This is a simple annotator for writing out XMI files, used by the parsing examples.

LineReaderXmiWriter() - Constructor for class org.cleartk.util.cr.linereader.LineReaderXmiWriter

 

LineWriter<ANNOTATION_TYPE extends Annotation,BLOCK_TYPE extends Annotation> - Class in org.cleartk.util.ae.linewriter

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

LineWriter() - Constructor for class org.cleartk.util.ae.linewriter.LineWriter

 

M

movePastWhiteSpaceChars(String, int) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

 

N

neitherParameterSet(String, Object, String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException

 

notExactlyOneParameterSet(String, Object, String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException

 

notSingleCharacter(String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException

 

numUrisCompleted - Variable in class org.cleartk.util.cr.UriCollectionReader

 

O

org.cleartk.util - package org.cleartk.util

 

org.cleartk.util.ae - package org.cleartk.util.ae

 

org.cleartk.util.ae.linewriter - package org.cleartk.util.ae.linewriter

 

org.cleartk.util.ae.linewriter.annotation - package org.cleartk.util.ae.linewriter.annotation

 

org.cleartk.util.ae.linewriter.block - package org.cleartk.util.ae.linewriter.block

 

org.cleartk.util.ae.parenthetical - package org.cleartk.util.ae.parenthetical

 

org.cleartk.util.collection - package org.cleartk.util.collection

 

org.cleartk.util.cr - package org.cleartk.util.cr

 

org.cleartk.util.cr.linereader - package org.cleartk.util.cr.linereader

 

org.cleartk.util.similarity - package org.cleartk.util.similarity

 

org.cleartk.util.treebank - package org.cleartk.util.treebank

 

OS_LINUX - Static variable in class org.cleartk.util.PlatformDetection

 

OS_OSX - Static variable in class org.cleartk.util.PlatformDetection

 

OS_SOLARIS - Static variable in class org.cleartk.util.PlatformDetection

 

OS_WINDOWS - Static variable in class org.cleartk.util.PlatformDetection

 

outputDirectory - Variable in class org.cleartk.util.ae.XmiWriter

 

overlaps(Annotation, Annotation) - Static method in class org.cleartk.util.AnnotationUtil

 

P

PARAM_ANNOTATION_WRITER_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter

 

PARAM_BLOCK_ANNOTATION_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter

 

PARAM_BLOCK_WRITER_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter

 

PARAM_COMMENT_SPECIFIERS - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_DELIMITER - Static variable in class org.cleartk.util.cr.linereader.SimpleLineHandler

 

PARAM_DIRECTORY - Static variable in class org.cleartk.util.cr.UriCollectionReader

 

PARAM_DIRECTORY_FILTER_CLASS - Static variable in class org.cleartk.util.cr.UriCollectionReader

 

PARAM_ENCODING - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_ENCODING - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_FILE_FILTER_CLASS - Static variable in class org.cleartk.util.cr.UriCollectionReader

 

PARAM_FILE_NAMES - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_FILE_OR_DIRECTORY_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_FILE_SUFFIX - Static variable in class org.cleartk.util.ae.linewriter.LineWriter

 

PARAM_FILES - Static variable in class org.cleartk.util.cr.UriCollectionReader

 

PARAM_IGNORE_SYSTEM_FILES - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_LANGUAGE - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_LANGUAGE - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_LEFT_PARENTHESIS - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

PARAM_LINE_HANDLER_CLASS_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_NAME_FILES_FILE_NAMES - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_OUTPUT_ANNOTATION_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter

 

PARAM_OUTPUT_DIRECTORY - Static variable in class org.cleartk.util.ae.XmiWriter

 

PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter

 

PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.util.ae.PlainTextWriter

 

PARAM_OUTPUT_FILE_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter

 

PARAM_PARENTHETICAL_TYPE_NAME - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

PARAM_PATTERNS - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_RIGHT_PARENTHESIS - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

PARAM_ROOT_FILE - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_SKIP_BLANK_LINES - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_SUFFIXES - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_SUFFIXES - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_URIS - Static variable in class org.cleartk.util.cr.UriCollectionReader

 

PARAM_VIEW_NAME - Static variable in class org.cleartk.util.cr.FilesCollectionReader

 

PARAM_VIEW_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader

 

PARAM_WINDOW_TYPE_NAME - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

PARAM_XML_SCHEME - Static variable in class org.cleartk.util.ae.UriToXmiCasAnnotator

 

PARAM_XML_SCHEME - Static variable in class org.cleartk.util.cr.XReader

 

parameterLessThan(String, Object, Object) - Static method in exception org.cleartk.util.CleartkInitializationException

 

ParamUtil - Class in org.cleartk.util

Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.

ParamUtil() - Constructor for class org.cleartk.util.ParamUtil

 

parensMatch(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

 

ParentheticalAnnotator - Class in org.cleartk.util.ae.parenthetical

Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

ParentheticalAnnotator() - Constructor for class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

parse(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

Create TreebankNode objects corresponding to the given TreeBank format parse, e.g.:

parse(String, String, int) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

Create TreebankNode objects corresponding to the given TreeBank format parse, e.g.:

parseDocument(String, int, String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

This method parses an entire documents worth of treebanked sentences.

PlainTextWriter - Class in org.cleartk.util.ae

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

PlainTextWriter() - Constructor for class org.cleartk.util.ae.PlainTextWriter

 

PlatformDetection - Class in org.cleartk.util

Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.

PlatformDetection() - Constructor for class org.cleartk.util.PlatformDetection

 

prepareString(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

This method was created simply as a way to clean up the parse string for a sentence in the treebank syntax.

process(JCas) - Method in class org.cleartk.util.ae.linewriter.LineWriter

 

process(JCas) - Method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator

 

process(JCas) - Method in class org.cleartk.util.ae.PlainTextWriter

 

process(JCas) - Method in class org.cleartk.util.ae.UriToDocumentTextAnnotator

 

process(JCas) - Method in class org.cleartk.util.ae.UriToXmiCasAnnotator

 

process(JCas) - Method in class org.cleartk.util.ae.XmiWriter

 

put(String, String) - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

putAll(Map<? extends String, ? extends String>) - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

R

read(Reader) - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

ReflectionUtil - Class in org.cleartk.util

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

ReflectionUtil() - Constructor for class org.cleartk.util.ReflectionUtil

 

ReflectionUtil.TypeArgumentDelegator - Interface in org.cleartk.util

 

RegexFileFilter - Class in org.cleartk.util.cr

Filters files using supplied regular expression(s).

RegexFileFilter(String) - Constructor for class org.cleartk.util.cr.RegexFileFilter

Construct a new regular expression filter.

RegexFileFilter(String, IOCase) - Constructor for class org.cleartk.util.cr.RegexFileFilter

Construct a new regular expression filter with the specified flags case sensitivity.

RegexFileFilter(String, int) - Constructor for class org.cleartk.util.cr.RegexFileFilter

Construct a new regular expression filter with the specified flags.

RegexFileFilter(Pattern) - Constructor for class org.cleartk.util.cr.RegexFileFilter

Construct a new regular expression filter for a compiled regular expression

rootFile - Variable in class org.cleartk.util.cr.FilesCollectionReader

 

run() - Method in class org.cleartk.util.InputStreamHandler

read data into buffer

S

selectFirstMatching(JCas, Class<T>, Annotation) - Static method in class org.cleartk.util.AnnotationUtil

 

selectMatching(JCas, Class<T>, Annotation) - Static method in class org.cleartk.util.AnnotationUtil

 

setArch(String) - Method in class org.cleartk.util.PlatformDetection

 

setChildren(List<TreebankNode>) - Method in class org.cleartk.util.treebank.TreebankNode

 

setLeaf(boolean) - Method in class org.cleartk.util.treebank.TreebankNode

 

setOs(String) - Method in class org.cleartk.util.PlatformDetection

 

setOutputDirectoryName(String) - Method in class org.cleartk.util.ae.PlainTextWriter

 

setParent(TreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode

 

setParseBegin(int) - Method in class org.cleartk.util.treebank.TreebankNode

 

setParseEnd(int) - Method in class org.cleartk.util.treebank.TreebankNode

 

setTags(String[]) - Method in class org.cleartk.util.treebank.TreebankNode

 

setText(String) - Method in class org.cleartk.util.treebank.TreebankNode

 

setTextBegin(int) - Method in class org.cleartk.util.treebank.TreebankNode

the offset of the plain text for this node with respect to the sentence text adjusted by the textOffset passed into the parse method.

setTextEnd(int) - Method in class org.cleartk.util.treebank.TreebankNode

 

setTopNode(TopTreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode

 

setTreebankParse(String) - Method in class org.cleartk.util.treebank.TopTreebankNode

 

setType(String) - Method in class org.cleartk.util.treebank.TreebankNode

 

setURI(CAS, URI) - Static method in class org.cleartk.util.ViewUriUtil

Set the primary Uniform Resource Identifier for this CAS and all its views.

setURI(JCas, URI) - Static method in class org.cleartk.util.ViewUriUtil

Set the primary Uniform Resource Identifier for this JCas and all its views.

setValue(String) - Method in class org.cleartk.util.treebank.TreebankNode

 

similarity(String, String) - Static method in class org.cleartk.util.similarity.Levenshtein

 

SimpleLineHandler - Class in org.cleartk.util.cr.linereader

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

SimpleLineHandler() - Constructor for class org.cleartk.util.cr.linereader.SimpleLineHandler

 

size(Annotation) - Static method in class org.cleartk.util.AnnotationUtil

 

sort(List<T>) - Static method in class org.cleartk.util.AnnotationUtil

 

splitSentences(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser

Generally speaking, we expect one treebanked sentence per line.

StringMapper - Interface in org.cleartk.util.collection

Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.

stringToUri - Variable in class org.cleartk.util.cr.UriCollectionReader

 

T

TopTreebankNode - Class in org.cleartk.util.treebank

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

TopTreebankNode() - Constructor for class org.cleartk.util.treebank.TopTreebankNode

 

toString() - Method in class org.cleartk.util.PlatformDetection

 

TreebankFormatParser - Class in org.cleartk.util.treebank

This class was written to be a stand alone parser for the Penn Treebank data.

TreebankFormatParser() - Constructor for class org.cleartk.util.treebank.TreebankFormatParser

 

TreebankNode - Class in org.cleartk.util.treebank

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

TreebankNode() - Constructor for class org.cleartk.util.treebank.TreebankNode

 

TreebankObject - Interface in org.cleartk.util.treebank

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

TYPE_REGEX - Static variable in class org.cleartk.util.treebank.TreebankFormatParser

used to identify the type of a consituent in a treebank parse tree.

U

uncheckedCast(Object) - Static method in class org.cleartk.util.ReflectionUtil

Perform an unchecked cast based on a type parameter.

UnknownKeyException - Exception in org.cleartk.util.collection

Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.

UnknownKeyException(String) - Constructor for exception org.cleartk.util.collection.UnknownKeyException

 

URI - Static variable in class org.cleartk.util.ViewUriUtil

The view where the document Uniform Resource Identifier is placed.

UriCollectionReader - Class in org.cleartk.util.cr

Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.

UriCollectionReader() - Constructor for class org.cleartk.util.cr.UriCollectionReader

 

UriCollectionReader.RejectSystemDirectories - Class in org.cleartk.util.cr

 

UriCollectionReader.RejectSystemDirectories() - Constructor for class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories

 

UriCollectionReader.RejectSystemFiles - Class in org.cleartk.util.cr

 

UriCollectionReader.RejectSystemFiles() - Constructor for class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles

 

uriCount - Variable in class org.cleartk.util.cr.UriCollectionReader

 

uriIter - Variable in class org.cleartk.util.cr.UriCollectionReader

 

UriToDocumentTextAnnotator - Class in org.cleartk.util.ae

Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.

UriToDocumentTextAnnotator() - Constructor for class org.cleartk.util.ae.UriToDocumentTextAnnotator

 

UriToXmiCasAnnotator - Class in org.cleartk.util.ae

Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.

UriToXmiCasAnnotator() - Constructor for class org.cleartk.util.ae.UriToXmiCasAnnotator

 

UriToXmiCasAnnotator.XmlScheme - Enum in org.cleartk.util.ae

 

V

valueOf(String) - Static method in enum org.cleartk.util.ae.UriToXmiCasAnnotator.XmlScheme

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.cleartk.util.ae.UriToXmiCasAnnotator.XmlScheme

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

ViewUriUtil - Class in org.cleartk.util

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

ViewUriUtil() - Constructor for class org.cleartk.util.ViewUriUtil

 

W

Writable - Interface in org.cleartk.util.collection

Copyright (c) 2007-2009, Regents of the University of Colorado
All rights reserved.

write(Writer) - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

write(Writer, boolean) - Method in class org.cleartk.util.collection.CompressedStringBiMap

 

write(File) - Method in class org.cleartk.util.collection.GenericStringMapper

 

write(Writer) - Method in class org.cleartk.util.collection.GenericStringMapper

 

write(File) - Method in interface org.cleartk.util.collection.Writable

 

write(Writer) - Method in interface org.cleartk.util.collection.Writable

 

writeAnnotation(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter

 

writeAnnotation(JCas, ANNOTATION_TYPE) - Method in interface org.cleartk.util.ae.linewriter.AnnotationWriter

 

writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter

 

writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter

 

writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter

 

writeBlock(JCas, BLOCK_TYPE) - Method in interface org.cleartk.util.ae.linewriter.BlockWriter

 

X

XCAS - Static variable in class org.cleartk.util.cr.XReader

 

XMI - Static variable in class org.cleartk.util.cr.XReader

 

XmiWriter - Class in org.cleartk.util.ae

This is a simple annotator for writing out XMI files, used by the parsing examples.

XmiWriter() - Constructor for class org.cleartk.util.ae.XmiWriter

 

XReader - Class in org.cleartk.util.cr

Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

XReader() - Constructor for class org.cleartk.util.cr.XReader