Index
All Classes and Interfaces|All Packages
D
- decode(ByteBuffer, int) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Decode the specified byte buffer as an unambiguous DNA sequence the specified length as a string.
- decode(ByteBuffer, int, T) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Decode the specified byte buffer as an unambiguous DNA sequence the specified length to the specified appendable.
- decodeWithAmbiguity(ByteBuffer, int) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Decode the specified byte buffer as a DNA sequence with ambiguity symbols the specified length as a string.
- decodeWithAmbiguity(ByteBuffer, int, T) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Decode the specified byte buffer as a DNA sequence with ambiguity symbols the specified length to the specified appendable.
- decodeWithNs(ByteBuffer, int) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Decode the specified byte buffer as a DNA sequence with N ambiguity symbols the specified length as a string.
- decodeWithNs(ByteBuffer, int, T) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Decode the specified byte buffer as a DNA sequence with N ambiguity symbols the specified length to the specified appendable.
E
- encode(String) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Encode the specified unambiguous DNA sequence to a new byte buffer.
- encode(String, ByteBuffer) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Encode the specified unambiguous DNA sequence to the specified byte buffer.
- encodeWithAmbiguity(String) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Encode the specified DNA sequence with ambiguity symbols to a new byte buffer.
- encodeWithAmbiguity(String, ByteBuffer) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Encode the specified DNA sequence with ambiguity symbols to the specified byte buffer.
- encodeWithNs(String) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Encode the specified DNA sequence with N ambiguity symbols to a new byte buffer.
- encodeWithNs(String, ByteBuffer) - Static method in class org.dishevelled.bio.sequence.Sequences
-
Encode the specified DNA sequence with N ambiguity symbols to the specified byte buffer.
F
- formatBits(byte) - Static method in class org.dishevelled.bio.sequence.Sequences
O
- org.dishevelled.bio.sequence - package org.dishevelled.bio.sequence
-
Sequences.
S
- Sequences - Class in org.dishevelled.bio.sequence
-
Utility methods on sequences.
- Sequences() - Constructor for class org.dishevelled.bio.sequence.Sequences
All Classes and Interfaces|All Packages