Package org.geneontology.obographs.owlapi

Class FromOwl

java.lang.Object

org.geneontology.obographs.owlapi.FromOwl

public class FromOwl
extends Object

Implements OWL to OG translation ===

See OWL Mapping spec

Author:

cjm

See Also:

• "[SPEC](https://github.com/geneontology/obographs/blob/master/README-owlmapping.md)"

Field Summary

Fields

Modifier and Type	Field	Description
static final String	INVERSE_OF
static final String	SUBCLASS_OF
static final String	SUBPROPERTY_OF
static final String	TYPE

Constructor Summary

Constructors

Constructor	Description
FromOwl()

Method Summary

Modifier and Type	Method	Description
Graph	generateGraph(org.semanticweb.owlapi.model.OWLOntology ontology)
GraphDocument	generateGraphDocument(org.semanticweb.owlapi.model.OWLOntology baseOntology)
boolean	isDefinitionProperty(org.semanticweb.owlapi.model.IRI iri)
boolean	isHasSynonymTypeProperty(org.semanticweb.owlapi.model.IRI iri)
boolean	isHasXrefProperty(org.semanticweb.owlapi.model.IRI iri)
boolean	isInSubsetProperty(org.semanticweb.owlapi.model.IRI iri)
boolean	isOboInOwlIdProperty(org.semanticweb.owlapi.model.IRI iri)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

SUBCLASS_OF

public static final String SUBCLASS_OF

See Also:

• Constant Field Values

SUBPROPERTY_OF

public static final String SUBPROPERTY_OF

See Also:

• Constant Field Values

INVERSE_OF

public static final String INVERSE_OF

See Also:

• Constant Field Values

TYPE

public static final String TYPE

See Also:

• Constant Field Values

Constructor Details

FromOwl

public FromOwl()

Method Details

generateGraphDocument

public GraphDocument generateGraphDocument(org.semanticweb.owlapi.model.OWLOntology baseOntology)

Parameters:

baseOntology -

Returns:

GraphDocument where each graph is an ontology in the ontology closure

See Also:

• OWL Mapping spec

generateGraph

public Graph generateGraph(org.semanticweb.owlapi.model.OWLOntology ontology)

Parameters:

ontology -

Returns:

Graph generated from ontology

isDefinitionProperty

public boolean isDefinitionProperty(org.semanticweb.owlapi.model.IRI iri)

isHasXrefProperty

public boolean isHasXrefProperty(org.semanticweb.owlapi.model.IRI iri)

isInSubsetProperty

public boolean isInSubsetProperty(org.semanticweb.owlapi.model.IRI iri)

isHasSynonymTypeProperty

public boolean isHasSynonymTypeProperty(org.semanticweb.owlapi.model.IRI iri)

isOboInOwlIdProperty

public boolean isOboInOwlIdProperty(org.semanticweb.owlapi.model.IRI iri)