org.genesys2.rdf.model.germplasm

Class DescriptorOntology

java.lang.Object

org.genesys2.rdf.model.rdf.ModelDocument

org.genesys2.rdf.model.germplasm.DescriptorOntology

Direct Known Subclasses:

DarwinCoreGermplasmType, MCPDOntology

public abstract class DescriptorOntology
extends ModelDocument

The Class DescriptorOntology.

Field Summary

Fields

Modifier and Type	Field and Description
static String	ALIAS The Constant ALIAS.
static String	DEFINITION The Constant DEFINITION.
static String	NAME The Constant NAME.

Fields inherited from class org.genesys2.rdf.model.rdf.ModelDocument

_trace_level, COMMENT, DEBUG, DESCRIPTION, DOMAIN, INFO, LABEL, MEMBER, modelURI, NONE, RANGE, SUB_CLASS_OF, SUB_PROPERTY_OF, VERBOSE

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	DescriptorOntology(String modelURI) Instantiates a new descriptor ontology.
protected	DescriptorOntology(String modelURI, String language) Instantiates a new descriptor ontology.

Method Summary

Modifier and Type	Method and Description
Map<String,String>	categories() Method to return all the categories of descriptors in a given set.
Map<String,String>	categoryDetails(String categoryURI, String language) Loads descriptor category-specific details.
Map<String,String>	definition(Map<String,String> details, String descriptorURI, String language) This is a variant of the ModelDocument details() method, which uses SKOS prefLabel instead of the rdfs:label property and the SKOS definition instead of the rdfs:comment and rdfs:description properties.
Map<String,String>	descriptorDetails(String descriptorURI, String language) Loads descriptor descriptor specific details.
Map<String,String>	descriptors(String categoryURI) Loads Map of descriptors from a given category.

Methods inherited from class org.genesys2.rdf.model.rdf.ModelDocument

_load, classDetails, classes, collections, dumpModel, dumpModel, dumpModel, dumpModel, dumpModel, dumpSchema, dumpSchema, lookup, lookup, members, parser, properties, propertyDetails, setLanguage, subjectsOfType, trace, translatedModel, URI

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAME

public static final String NAME

The Constant NAME.

See Also:

Constant Field Values

ALIAS

public static final String ALIAS

The Constant ALIAS.

See Also:

Constant Field Values

DEFINITION

public static final String DEFINITION

The Constant DEFINITION.

See Also:

Constant Field Values

Constructor Detail

DescriptorOntology

protected DescriptorOntology(String modelURI)
                      throws IOException,
                             ModelException

Instantiates a new descriptor ontology.

Parameters:

modelURI - the model uri

Throws:

IOException - Signals that an I/O exception has occurred.

ModelException - the model exception

DescriptorOntology

protected DescriptorOntology(String modelURI,
                             String language)
                      throws IOException,
                             ModelException

Instantiates a new descriptor ontology.

Parameters:

modelURI - the model uri

language - the language

Throws:

IOException - Signals that an I/O exception has occurred.

ModelException - the model exception

Method Detail

definition

public Map<String,String> definition(Map<String,String> details,
                                     String descriptorURI,
                                     String language)
                              throws RDFParserException

This is a variant of the ModelDocument details() method, which uses SKOS prefLabel instead of the rdfs:label property and the SKOS definition instead of the rdfs:comment and rdfs:description properties.

Parameters:

details - is a pre-existing target Map for loading

descriptorURI - the descriptor uri

language - ISO639-2 two or three character language code. Defaults to English if not given.

Returns:

the map

Throws:

RDFParserException - the RDF parser exception

categories

public Map<String,String> categories()
                              throws RDFParserException

Method to return all the categories of descriptors in a given set.

Returns:

categories where the key is a given category URI and the value is a pipe '|' concatenated list of descriptors.

Throws:

RDFParserException - the RDF parser exception

categoryDetails

public Map<String,String> categoryDetails(String categoryURI,
                                          String language)
                                   throws RDFParserException

Loads descriptor category-specific details.

Parameters:

categoryURI - the category uri

language - the language

Returns:

map loaded with descriptor meta-data

Throws:

RDFParserException - the RDF parser exception

descriptors

public Map<String,String> descriptors(String categoryURI)
                               throws RDFParserException

Loads Map of descriptors from a given category. Modelled as members of a categoryURI collection.

Parameters:

categoryURI - the category uri

Returns:

map loaded with descriptor meta-data

Throws:

RDFParserException - the RDF parser exception

descriptorDetails

public Map<String,String> descriptorDetails(String descriptorURI,
                                            String language)
                                     throws RDFParserException

Loads descriptor descriptor specific details.

Parameters:

descriptorURI - - URI of the descriptor

language - - ISO

Returns:

map loaded with descriptor meta-data

Throws:

RDFParserException - the RDF parser exception